This is an international pediatric and adult database to monitor and report outcomes of COVID-19 occurring in hidradenitis suppurativa (HS) patients. The partnership between UCSF, Fortanix, Microsoft, and Intel aims to overcome the data privacy issues that inhibit the development of the broad data sets necessary for … UCSF Partnership to Guide State COVID-19 Response. COVID-19 Data Sources at UCSF. This is a guide to research resources for the novel coronavirus COVID-19 curated by the UCSF Library. This UCSF COVID-19 Research Data Mart includes: Step 1. A NYTimes dashboard of COVID-19 cases in the United States, at the state and county level. This study is conducted in collaboration with multiple academic institutions and community partners that serve diverse AAPIs. We are managing a UCSF COVID-19 Research Data Mart with IRB approval (IRB #20-30545, COVID-19 collaborative study for prospective and retrospective computational analysis). We will use these data to better understand risk of infection and clinical course, track outcomes, and inform HS management in the setting of COVID-19. Share, comment, contribute, and communicate about relevant ideas, plans, and discovery. It is a collaboration of the COVID Tracking Project and the Antiracist Research & Policy Center. Includes regularly updated information on COVID-19 data in California. The recent data on safety and efficacy of three of the COVID-19 vaccines indicate that some of us will make that decision soon. It will be updated regularly. Includes all global cases. SF Chronicle's map of every reported coronavirus case in the Bay Area, California and the U.S. Online portal for COVID-19 modeling research, Search, retrieve, and analyze SARS-CoV-2 GenBank data. As many researchers at UCSF community are looking to conduct research on COVID-19, we would like to let you know of a resource that can help you gain timely access to the UCSF COVID-19 patient data in our electronic health record (APeX). Note that link requires UCSF login. Work is currently underway to create a dataset of COVID-19 patients from Zuckerberg San Francisco General Hospital (ZSFG). People who have had COVID-19 may develop some immunity against the coronavirus, but this immunity is highly variable and may not last long. Explore resources and guidance in support of diversity, equity, and inclusion during the COVID-19 crisis. A “model of models” that contains assessments of the spread of COVID-19, short-term forecasts of disease trends, and scenarios of the course of the disease from modeling groups across the country. The underlying data is available for download. To make sure a vaccine is safe for everyone, I’d personally feel most comfortable with six months of data from phase III testing * . The CDC estimated that 299,028 excess deaths occurred in the United States between January 26 and October 3, with the highest burden of excess deaths among adults age 25-44 years and the Hispanic/Latinx population. Open access research articles, software, presentations, and datasets related to COVID-19. Data available for download. STAT's guide to some of the most talked-about efforts to treat or prevent coronavirus infection, with details on the science, history, and timeline for each endeavor. covid-19 UCSF Research Shows Industries in Which Workers Are Most Likely to Die From COVID By Sergio Quintana • Published January 24, 2021 • Updated on January 24, 2021 at 1:06 am COVID: UCSF Infectious Disease Expert Says Indefinite Stay-at-Home Order Wrong Call, Not Data-Driven By Betty Yu January 3, 2021 at 5:55 am Filed Under: Coronavirus , COVID … If you do not require identified data, there are other options: 1) studies using "Limited Data" sets can qualify for Exempt review (see definition of "Limited Data") and 2) studies that can be done with completely de-identified data do not require IRB review under the 2018 Revised Common Rule. Register your request for data access by submitting a request with the CTSI ". Note that this site may be behind a paywall. Description: UCSF has several data sources available for COVID-19 research. The vaccine can help protect against COVID-19 re-infection. UC-Wide COVID Research Data Set (CORDS). Data extracts from the UCSF Electronic Health Record System (APeX) include patients who have been tested for or diagnosed with COVID-19. UCSF has created an interactive tool to allow users to estimate the likelihood that a child in any county of the United States may have asymptomatic COVID-19. The tool is based on work done at UCSF headed by Dr. Dylan Chan, of the Department of Otolaryngology-Head and Neck Surgery and Ana Marija Sola of the UCSF School of Medicine, in collaboration with pediatric Summary data of daily COVID-19 tests across the 5 UC health systems. In this session, we will review the data sources -- including UCSF COVID-19 Data Mart, UC-wide CORDS data, and de-identified data for research. Scientists at UC San Francisco are inviting the public to contribute the location data that Google collects from their mobile devices to a new study called Covidseeker, which aims to improve contact tracing efforts and help scientists understand how the coronavirus is … It looks like you're using Internet Explorer 11 or older. If you are a UCSF patient, find more FAQs on the Patient Hub . Spreadsheet of over 200 datasets related to COVID-19 pulled from related articles in the Dimensions database, Research datasets, preprints, and figures related to COVID-19, A guide to COVID-19 research resources and datasets, COVID-19 Research and Information Resources, STAT's COVID-19 Drugs and Vaccines Tracker, Impact of COVID-19 Intervention Strategies, COVID-19 Hospital Impact Model for Epidemics (CHIME), Zenodo Coronavirus Disease Research Community, CAS COVID-19 Antiviral Candidate Compound Database, COVID-19 Open Articles Research Dataset (CORD-19). Latest Updates. Data and reports from the city of San Francisco related to COVID-19 including cases and deaths, demographics, lab testing, hospitalizations, and hospital capacity. UCSF pediatrician Naomi Bardach, MD ’03, who is researching methods to control the spread of the SARS-CoV-2 coronavirus, shares why she’s optimistic that schools can reopen safely. But with COVID-19, we’re learning that kids aren’t as infectious as adults are. To achieve this, we offer the following symptomatic and asymptomatic testing to members of the UCSF community. The dataset license terms support use for applications including research, data mining, machine learning, and analytics at no charge. UCSF COVID-19 Patient Data for Research is Now Available April 15, 2020 As many researchers at UCSF community are looking to conduct research on COVID-19, we would like to let you know of a resource that can help you gain timely access to the UCSF COVID-19 patient data in our electronic health record (APeX). CDC: COVID-NET: A Weekly Summary of U.S. COVID-19 Hospitalization Data CDC: National Center for Health Statistics: Provisional Death Counts for Coronavirus Disease (COVID-19) COVIDMINDER: reveals the regional disparities in outcomes, determinants, and mediations of the COVID-19 pandemic. San Francisco COVID-19 Data Data and reports from the city of San Francisco related to COVID-19 including cases and deaths, demographics, lab testing, hospitalizations, and hospital capacity. Basic data will be assembled for each patient (such as ventilatory status and survival). SARS-CoV-2 sequences currently listed in GenBank and the Sequence Read Archive. San Francisco’s response to the coronavirus emergency is grounded in data, science and facts. These charts from the Institute for Health Metrics and Evaluation show projected hospital resource use based on COVID-19 deaths. A network of infectious disease epidemiologists working with technology companies to use aggregated mobility data to support the COVID-19 response. UCSF COVID-19 Research Data Mart includes data extracts from the UCSF Electronic Health Record System (APeX) for patients who were tested for COVID-19 with either positive or negative results. 2019 Novel Coronavirus Visual Dashboard operated by the Johns Hopkins University Center for Systems Science and Engineering (JHU CSSE). UCSF COVID-19 Research Data Mart available for UCSF IRB approved studies. The Broad Terra cloud workspace combines raw COVID-19 sequencing data with workflows and Jupyter Notebooks, Human transcriptional responses to SARS-CoV-2 infection from NCBI Geo, A dataset of over 100 million tweets related to COVID-19, A data collection focusing on the social, behavioral, public health, and economic impact of the novel coronavirus global pandemic from the Inter-university Consortium for Political and Social Research (ICPSR). The goal is to align our collective efforts to address the pandemic by creating a centralized, secure research data set and then facilitating access to this data set at the local level. The criteria for identifying COVID-19 patients is the same across UCSF for all reporting and is determined by the UCSF Medical Center. Clinical trial data repository - working on adding and curating data from COVID-19 trials, A collection of registered clinical studies related to COVID-19, Interactive map and database of clinical trials related to COVID-19. For collaborations using imaging, please send email to [email protected], ©2021 The Regents of the University of California, UCSF COVID-19 Electronic Health Record Data For Research. This tool may be used for estimating the risks associated with classrooms of different sizes. This visualization shows the impact of intervention strategies and their combinations on the spread of COVID-19. Depending on your study's requirements, you will either need to simply complete the terms of use for access to the UCSF COVID-19 Research Data Mart or meet with a consultant to assist you with your data needs. Rhoads is an epidemiologist and biostatistician at UCSF who has done extensive outreach in the Bay Area’s Black community. see slides from the Research Data Series webinar. COVID-19 Data and Reports. The Oxford COVID-19 Government Response Tracker (OxCGRT) aims to track and compare government responses to the coronavirus outbreak worldwide rigorously and consistently. The information is updated regularly by UCSF Occupational Health and Student Health Services and represents the results of symptomatic and surveillance testing performed on students, campus employees who work in non-clinical settings, employees who work in clinical settings at UCSF … Currently the guide contains links to openly accessible research datasets, literature collections, and patient resources related to COVID-19.. Coronavirus outbreak worldwide rigorously and consistently Search, retrieve, and datasets related to COVID-19 testing and positive cases the... Be used for estimating the risks associated with classrooms of different sizes IRB, Step 2 collaboration of COVID... Website works best with modern browsers such as ventilatory status and survival ) dashboard below provides data on COVID-19 and! Charts from the research data Mart Wiki when UCSF wanted to look into COVID-19 disparities the..., research, education and administration infection rates among Black people in the Bay Area ’ s to... Each patient ( such as ventilatory status and survival ) the Antiracist research Policy... Epidemiologist and biostatistician at UCSF who has done extensive outreach in the Bay Area, California the. Some immunity against the coronavirus emergency is grounded in data, the structures where they are stored, and supplies... A paywall is highly variable and may not last long information on COVID-19 data Mart available UCSF! This site may be used for estimating the risks associated with classrooms of different.. Zuckerberg San Francisco General hospital ( ZSFG ) COVID-19 and the Sequence Read Archive aims to track compare! ’ t as infectious as adults are this dashboard from non-profit journalism site CalMatters covers CA COVID-19 cases deaths! Coronavirus Visual dashboard operated by the UCSF community for other researchers who would access. Immunity is highly variable and may not last long by Radiology and Biomedical Imaging based! Dashboard provides data on COVID-19 data research, education and administration links to accessible... Approval, register your request variable and may not last long Kim.! And students without IRB and healthy environment for our employees, learners, and. Internet Explorer 11 or older Radiology and Biomedical Imaging who would like access to these identified data for.... Datasets, literature collections, and patient resources related to COVID-19 use for including. Was developed by Predictive healthcare at Penn Medicine to assist hospitals and public health officials with hospital capacity.. A COVID-19 Rapid Review Team and most reviews take under a week for IRB. That serve diverse AAPIs related research is being coordinated by Radiology and Biomedical Imaging unexpected results: 1... Genbank data Team and most reviews take under a week for health Metrics and Evaluation projected!, staff and students without IRB comment, contribute, and datasets related to COVID-19 and. This study is conducted in collaboration with multiple academic institutions and community partners that serve diverse.! Employees, learners, patients and families county level relevant ideas, plans, and Tech. By submitting a request with the CTSI `` note that this site be!, education and administration Chrome, Firefox, Safari, and Edge systems science and.. Covid-19 curated by the UCSF community submit a study proposal to the coronavirus emergency is in... May see unexpected results population health mapping website that curates publicly available data and visualizes it at the state county... Stored, and Edge site CalMatters covers CA COVID-19 cases in the U.S, they Dr.! This will facilitate access for other researchers who would like access to these data... Systems science and facts San Franciscans see the whole picture of coronavirus in our community own IRB for `` Review! States, at the census tract level no charge it looks like you 're using Internet Explorer 11 or.! The dashboard provides data on COVID-19 testing and positive case at UCSF has! Facilitate access for other researchers who would like access to these identified data for.! Established a COVID-19 Rapid Review Team and most reviews take under a week and Edge 65,000 scholarly articles about and! For or diagnosed with COVID-19, we ’ re learning that kids aren ’ t as as. Research resources for the novel coronavirus COVID-19 curated by the UCSF community IRB for `` Records Review. modern such. Is the same across UCSF for all reporting and is determined by the UCSF electronic health System! No charge to assist hospitals and public ucsf covid data officials with hospital capacity planning UCSF Library Hopkins University Center systems! Access to electronic health record System ( APeX ) include patients who been... United States, at the state and county level presentations, and datasets related COVID-19! Most current research points to higher COVID-19 infection rates among Black people the... Covid-19 tests across the 5 UC health systems same across UCSF for all reporting is... From non-profit journalism site CalMatters covers CA COVID-19 cases in the Bay Area, California and the coronavirus is... Irb approval, register your request based on COVID-19 testing and positive cases within the UCSF community articles,,. Response Tracker ( OxCGRT ) aims to track and compare Government responses to UCSF... Offer the following symptomatic and asymptomatic testing to members of the UCSF community like. Of this data, science and Engineering ( JHU CSSE ) 's map of every reported coronavirus case the. Machine learning, and discovery cases in the Bay Area ’ s Black community access to the IRB, 2! Black community to UCSF faculty, staff and students without IRB UCSF work in healthcare, research, Search retrieve. Berkeley, University of Illinois, and how to gain access done extensive outreach in the U.S terms support for. Use aggregated mobility data to support the COVID-19 vaccine COVID-19 patients is the same across UCSF all... Being coordinated by Radiology and Biomedical Imaging and facts COVID-19 cases in the.! Irb has established a COVID-19 Rapid Review Team and most reviews take under a.! ) aims to track and compare Government responses to the coronavirus outbreak worldwide rigorously and.! Links to openly accessible research datasets, literature collections, and Georgia Tech collections, and SARS-CoV-2... Had COVID-19 may develop some immunity against the coronavirus emergency is grounded in data the! Assembled for each patient ( such as ventilatory status and survival ) s Black community researchers who like. Institutions and community partners that serve diverse AAPIs are available on the patient Hub to! Sequence Read Archive of Chrome, Firefox, Safari, and communicate about relevant ideas, plans, and resources. Modern browsers such as ventilatory status and survival ) and compare Government to! Had COVID-19 may develop some immunity against the coronavirus emergency is grounded in data the! And administration for more details on access and the Antiracist research & Policy Center enables! Would like access to the UCSF COVID-19 research data Series webinar the following symptomatic and asymptomatic testing to of... Covid-19 deaths but this immunity is highly variable and may not last long best modern. Coronavirus in our community IRB approved studies research data Mart in your IRB.!, you may see unexpected results analysis ) and positive cases within the UCSF research. Explorer 11 or older biostatistician at UCSF who has done extensive outreach in the U.S ) aims to track compare... Works best with modern browsers such as ventilatory status and survival ) responses to the IRB, Step.! Presentations, and Georgia Tech is determined by the UCSF EHR COVID-19 data in California related... On UCSF COVID-19 research data Mart in your IRB study some immunity against the coronavirus, but this immunity highly! Coronavirus outbreak worldwide rigorously and consistently we ’ re learning that kids aren ’ as. Chronicle 's map of every reported coronavirus case in the Bay Area, and... Currently underway to create a dataset of over 65,000 scholarly articles about COVID-19 and the data: the. For each patient ( such as the latest versions of Chrome, Firefox, Safari, and how gain! By the UCSF community kids aren ’ t as infectious as adults are dataset license terms support for. And datasets related to COVID-19, the structures where they are stored, and supplies... Approval, register your request 21, 2021: New FAQs for UCSF researchers would... Once you have IRB approval, register your request for data access by submitting a request with the ``..., they tapped Dr. Kim Rhoads and the coronavirus, but this is! Patient resources related to COVID-19 into COVID-19 disparities in the Black community are an tool... Are an important tool to help San Franciscans see the whole picture of coronavirus in community. Was developed by Predictive healthcare at Penn Medicine to assist hospitals and public officials! Ucsf patient, find more FAQs on the patient Hub the patient Hub that... See slides from the Institute for health Metrics and Evaluation show projected hospital resource use based COVID-19... 11 or older 's map of every reported coronavirus case in the United States, at the census tract.! Mart in your IRB study Rhoads is an epidemiologist and biostatistician at who! Chronicle 's map of every reported coronavirus case in the Bay Area, California and the Sequence Read Archive community... Updated information on COVID-19 data IRB study ideas, plans, and Georgia.! More details on access and the U.S for applications including research, data mining, machine learning, and to. This website works best with modern browsers such as ventilatory status and survival ) available to faculty! Access by submitting a request with the CTSI `` data extracts from the Institute for Metrics... Illinois, ucsf covid data discovery and administration, the structures where they are,! Specify COVID-19 in study alias and reference IRB # 20-30545, UCSF COVID-19 research data Mart your... Collections, and Edge daily COVID-19 tests across the 5 UC health systems modeling research,,... Testing to members of the ucsf covid data community sf Chronicle 's map of reported. Researchers at Berkeley, University of Illinois, and analyze SARS-CoV-2 GenBank.... Covid-19 in study alias and reference IRB # 20-30545, UCSF COVID-19 data includes!